Alternate Allele Consulting

Alternate Allele Consulting provides advanced bioinformatics, data science, and computational biology expertise to biotech, pharma, and life science organizations tackling complex biological questions. We partner with R&D teams to design, build, and interpret scalable analytical workflows across genomics, transcriptomics, epigenomics, proteomics, and multi-omic datasets. Our work spans target discovery and validation, biomarker development, assay and pipeline design, cross-species analysis, and machine-learning–driven insights to support translational and clinical research. With deep experience in RNA-seq, single-cell analysis, variant and copy-number analysis, epitope discovery, and cloud-native workflow orchestration (Nextflow, Snakemake, AWS), we deliver reproducible, production-ready solutions tailored to each client’s scientific and operational needs. Alternate Allele Consulting works with organizations ranging from early-stage startups to top-10 pharmaceutical companies, offering flexible engagement models—from targeted analyses and reports to fully automated platforms and long-term strategic support.