Andrea Cossa

Background

About Andrea Cossa

Data scientist (5-yrs full time experience) specialized in single-cell and genomics data analysis and interpretation. Tools and frameworks- git, conda, Docker, Singularity - python, R - Bash, Nextflow - Shiny, Streamlit Main core expertise- python/R code development and testing - High Performance Computing (HPC) and pipeline (Nextflow) development - Data engineering, modeling, visualization, interpretation and presentation - Scientific writing Main data analysis expertise- Single cell RNA-seq and multi-omics data analysis (including bulk and single-cell lineage tracing, genotype/phenotype association, perturbation and trajectory inference, TCR sequencing)- WES, Chip and Hi-Chip data analysis and integration - Long-read sequencing data analysis (variant and isoform calling)- Survival analysis and biomarker discovery - CyTOF data analysis - Logic modeling of gene regulatory networks (GRNs, fuzzy logic)